Hello @viet,
For this kind of code deployment, we are offering in our toolbox, both for the MPC and S32K the RAppID bootloader utility which can be used both over UART or CAN. But I don't think it uses CAN-FD.
To use it, you have to first flash the rbl bootloader file delivered with our toolbox, on the microcontroller using S32DS.
Then, in the model you have to select the Serial Download Interface option in the Target Connection tab of the Simulink config block. Once the code is automatically generated and built you have to open the RappID bootloader application and select the mot file, controller and the CAN probe.
This has been also discussed in this thread here https://community.nxp.com/t5/Model-Based-Design-Toolbox-MBDT/Is-it-possible-to-use-MBDT-development-...
Hope this helps,
Marius