Hello abhishek.kumar@chassisbrakes.com,
Each eTimer_Config block, initializes and creates code for the Module X, Channel Y selected in the General Tab. All the checked interrupts in the Interrupts tab are enabled for that particular channel.


For example, the images attached configuration initializes the Input Capture 2 interrupt and Overflow interrupt.
Now, for each Channel of the Module, you need to add the eTimer_ISR block, that will handle the interrupt request for the Module X, Channel Y. Each channel has only one interrupt vector, so all the Interrupts sources are muxed together to trigger only one interrupt, Here is ETIMER0_TC1IR_IRQHandler.

Now, what it is important here, is that the eTimer_ISR, returns an interrupt status, which contains the STS status register value. So the user need to include in the S-function attached to the ISR Handler output a logic in order to differentiate the interrupt source. Normally, when an interrupt appears the bit corresponding to that interrupt source is set. For more information, please go to the Reference Manual For MPC5744P.

Also, it is important to know that all the flags are cleared before exiting the interrupt routine.
Hope this helps,
Marius