Hello,
This is quite simple:
Use mode transition to reset state. Functional or destructive.

//Mode transition
MC_ME.MCTL.R = 0x00005AF0; //Functional reset Mode & Key
MC_ME.MCTL.R = 0x0000A50F; //Functional reset Mode & Key
or
//Mode transition
MC_ME.MCTL.R = 0xF0005AF0; //Destructive reset Mode & Key
MC_ME.MCTL.R = 0xF000A50F; //Destructive reset Mode & Key
Peter