Hello Matthew Berberich,
When you enter to ISP mode the MCU loads automatically the configurations for the pins P0_29 and P0_30 to work as UART_RX and UART_TX. Once you exit the ISP mode, in your application you can configure these pins to work with the function 5 that corresponds to TRACEDATA[2] and TRACEDATA[1]. If you enter again to the ISP mode the MCU will configure again these pins to work as a UART ISP automatically, but when you make a reset to exit ISP mode your application will load the configuration to work as the ETM TRACE pins again.
Hope it helps!
Victor.
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