Hello pgo,
The second gif is exactly what I get:

Looking into the thread you have posted... nothing worked. However I have edited the Kinetis klxx flash scripts according to one of the comments and have got the following response:

With the "normal" script all runs equal, but the end....

It seems that for some reason the register is not changing....
QUESTION: Is it normal to wait for soo long for the mass erase??
I decided to measure the reset rise times, after some measurements, (using "reset s h") I can see the reset line starting High going to low and high again, so it seems to be working fine, it is taking 2ms to complete. I don't know if it is good or bad, but since the reset on the FRDM-KL43Z board has the same timing, and it works, I assume that reset is not the problem.

Even though the clock line is disconnected from the freedom board chip, the DIO line is still up... so I will try to completely disable the Chip by cutting J17 and removing R1 and R2 to see what happens.
Do you have any "less invasive" suggestion?
Thank you very much for your support.