Hi Daniel,
Here are the general steps you will want to follow to get that to happen:
1) Make sure the pin you want to use is an LLWU pin listed in the LLWU input table in chapter 3 (it looks like PTE2 and PTE4 are for the K60).
2) Configure the pin you want to use for a digital function (any digital function should work, but personally, I recommend using the GPIO function).
3) Configure the pin in the LLWU pin enable register (it looks like these should be LLWU_P1 and LLWU_P2 respectively). The pin enable registers are LLWU_PEx. Consult the reference manual for which pin is controlled by which register.
4) I would also recommend enabling the LLWU interrupt in the NVIC. You can then check to see which wakeup pin woke you from LLS using the LLWU_Fx registers. Remember to clear the flag before leaving the interrupt routine.
That should be it. :smileyhappy:
~Chris