What it is trying to say is changing other bits in the register during operation will cause unknown glitches. So turn off the Rx and Tx while configuring the other bits.
To configure, in pseudo-code:
LPUART_CTRL = 0UL; /* Turn everything off */
LPUART_CTRL = (Configuration bits with Rx and Tx off);
LPUART_CTRL |= (RX|TX); /* Turn on both, or as needed, RX and TX */