If the minimum phase time is 10nS, if you fill the 10nS with 5 ticks, the tick frequency will reach up to 500MHz, the frequency is beyond the scope of timer input frequency.
Let me list the Timer maximum input clock frequency:
MC56F84xxx: 100MHz
Cold Fire family has the similar parameter, it is about 80 or 100MHz.
If you want to detect the phase shift, the timer has to have capture function, which means that both rising/falling edge of tested signal can trigger an capture interrupt, the speed of the core to handle the ISR is another problem.
In conclusion, I have not found the processor which can measure 10ns pulse width.
But the unique feature of the eFlexPWM module can test the deadtime tenure of PWM signal with the unused PWM pins(the unused PWM pins can be configured as input mode), the PWM resolution is about 10ns for MC56F84xxx family, but the deadtime must have several PWM clocks. The MC56F847xx and MPC56xx all have eFlexPWM module.
pls go to the website to download RM of MC56F84xxx:
http://tinyurl.com/nssr28o