Hi David,
can you share your modification in CPU_Init.c?
For me, it disables the NMI pin in PE_low_level_init() with the CPU_NMI_PIN set to 0x00U in CPU_config.h:
#if CPU_NMI_PIN
SIM_SOPT0 |= (uint32_t)SIM_SOPT0_NMIE_MASK; /* Enable NMI pin */
#else
SIM_SOPT0 &= (uint32_t)~(uint32_t)SIM_SOPT0_NMIE_MASK; /* Disable NMI pin */
#endif /* CPU_NMI_PIN */
Regards,
Erich