You originally said:
> I haven't been able to find any documentation or requirements for the oscillator input.
Sorry, I wrongly assumed you were one of the posters here who can't read a Data Sheet, as the oscillator input is documented there :-).
> whether the clipped sinewave will work with the processor.
The voltage levels for the EXTAL pin are given in the Data Sheet in "4.8 Oscillator and PLL electrical characteristics" as EVih and EVil which are 0.35 and 0.65 EVdd, or from 1.16 to 2.15, or a swing of 0.99V. That's very close to "approx. 1V peak-to-peak", but with no design margin at all and an impossibly tight requirement on the thresholds. The oscillator might give guarantees on the levels that can be made to better these levels.
The Data Sheet doesn't give minimum slew rates on inputs. It would be nice if it did.
If that doesn't work, the EXTAL input might be more sensitive (to lower swings) when in Crystal mode. That assumes we can believe "Figure 8-1. Device Clock Connections". So you might be able to change the BOOTMOD pins to use the oscillator as the buffer - as long as the existing design gives you strapping options on BOOTMOD and you can work in Default Mode. Murphy says you won't be that lucky. This is also operating outside of published specifications, so you'd have to reverse-engineer the part's characteristics and write your own tests and specs.
Getting the "clipped sine wave" to meet the 45%/55% duty cycle requirement might be tricky.
> the oscillator must fit the existing footprint on the board
Maybe you can do it the old fashioned way if the budget will stretch. Make a small adapter board with the crystal and a buffer on it that mounts on the existing footprint.
> phase noise, allan deviation, stability
Good. Someone treating a crystal with the respect it deserves (as compared to the way most people treat these complicated and magical little components :-). I trust you're familiar with John R Vig's documents on the subject:
http://www.ieee-uffc.org/frequency_control/teaching/pdf/fcdevices.pdf
http://www.am1.us/Local_Papers/U11625 VIG-TUTORIAL.pdf
For the benefit of others who might like to read up on how complicated a crystal can be, follow the references (especially #45 which points to the above documents) from:
http://en.wikipedia.org/wiki/Crystal_oscillator
I'm interested in what you need the stability for. There don't seem to be any internal peripherals that can make use of a high stability. I assume you're sampling a precision time source (or trying to be one). The PITs, DMA Timers and PWMs all run from the PLL and not from the crystal, so is the PLL likely to add to any oscillator noise problems in your application?
If you're timing anything using the PITs, watch out for the "Bear PIT" that can give you a 24% timer error:
Re: PIT hw boo-boo. Read if you need accurate PIT (CF)
Tom