Thank you all for the input! I was able to rid myself of the warning by a combination of suggestions.
Use of the SHORT directive for variables in the file where direct addressing is to be used with them.
Use of XDEF.B for variables declared in the file where SHORT was used that are to be referenced in other files where direct addressing is to be used.
Use of XREF.B for variables declared in the file where SHORT was used and where direct addressing is to be used.